Software tools for synthetic biology

Lattice creates software to enable synthetic biology workflows, pipelines, and best practices.

DNA sequence viewer supporting standard input.

visualization

dna

sequence

javascript

MIT

DNA assembly automation.

protocols

robotics

dna-assembly

plasmids

annotation

seqrecord

picklist

GPL-2.0

Repository-based plasmid design.

plasmid

gibson

assembly

dna

repositories

blast

bioinformatics

python

GPL-2.0

Pythonic nucleic acid folding.

structure

dna

rna

folding

dg

MIT

Codon optimization with recurrent neural networks.

codon-optimization

codon

deep-learning

benchmark

MIT

Primer design aimed at DNA assembly.

primer

design

assembly

dna

sequence

python

MIT

Parse sequence files or accession IDs to a simple, common format.

sequence

parser

genbank

fasta

jbei

sbol

ncbi

igem

javascript

MIT

Biodesign Metadata Exchange.

metadata

nuclear threat initiative

biosecurity

MIT